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Python wrapper for OMXWare REST services to access Data and Files.

Project description

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OMXWare
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.. image:: https://travis.ibm.com/GrandChallenge-Almaden/omxware-pypi.svg?token=zra2vLszsZmyB2CQTsas&branch=master
:target: https://travis.ibm.com/GrandChallenge-Almaden/omxware-pypi


.. image:: https://badge.fury.io/py/omxware.svg
:target: https://badge.fury.io/py/omxware
:alt: Latest Version

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**Web Services**

`https://omxware.sl.cloud9.ibm.com:9420/swagger <https://omxware.sl.cloud9.ibm.com:9420/swagger>`_

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**SDK Documentation:**

`https://pages.github.ibm.com/GrandChallenge-Almaden/omxware-pypi/ <https://pages.github.ibm.com/GrandChallenge-Almaden/omxware-pypi/>`_

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**Getting Started**

`https://pages.github.ibm.com/GrandChallenge-Almaden/omxware-pypi/build/html/usage.html <https://pages.github.ibm.com/GrandChallenge-Almaden/omxware-pypi/build/html/usage.html>`_

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**Help / Forums**

`http://omx-forums.sl.cloud9.ibm.com <http://omx-forums.sl.cloud9.ibm.com>`_

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Citation
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* Please contact the `OMXWare Team via the Forums <http://omx-forums.sl.cloud9.ibm.com/t/how-do-i-cite-omxware-in-a-presentation-or-publication/133>`_ for updated citation information prior to publishing or presenting OMXWare content.

e.g: ``"OMXWare: Microbial Life at Scale" IBM Research, manuscript in preparation``

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Use with Docker
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In an effort to make it easier to get started with OMXWare, we now have a docker image with ``python2`` and ``python3`` pre-installed.

* It comes with the latest ``omxware`` sdk pre-installed along with a bunch of python libs like ``matplotlib``, ``numpy`` and some others.

* This image also comes with a ``Jupyter`` server pre-installed.

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.. code-block:: bash

docker run -d --name jupyter --restart always -p 8888:8888 -e JUPYTER_ENABLE_LAB=yes \
-v /mnt/storage/jupyter:/home/jovyan/work c0mpiler/jupyter start.sh jupyter lab --LabApp.token=‘omxware’

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* Change the mount point ``/mnt/storage/jupyter`` to whatever you want on you host machine – so you can share files from your host with this docker image.

* This image also has some example Jupyter notebooks for you to look at and get started.

* Once you run the docker image – you can open up ``http://<host-name>:8888/lab?`` in your browser and the pwd is ``omxware``.

* The host-name is that of your host machine you run this docker image on. If you are running it on your laptop, the host-name is either ``localhost`` or ``0.0.0.0``





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History
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0.1.0 (2019-04-17)
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* First release on PyPI.


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