Project description

oncoboxlib

Oncobox Library which calculates scores.

pip install oncoboxlib

Create any directory that will be used a sandbox. Let's assume it is named sandbox.
Extract resources/databases.zip into sandbox/databases/.
(You may download it from https://gitlab.com/oncobox/oncoboxlib/-/blob/master/resources/databases.zip)
Extract example data resources/cyramza_normalized_counts.txt.zip into sandbox.
(You may download it from https://gitlab.com/oncobox/oncoboxlib/-/blob/master/resources/cyramza_normalized_counts.txt.zip)

What it looks like now:

   - sandbox
       - databases
           - Balanced 1.123
           - KEGG Adjusted 1.123
           ...
       - cyramza_normalized_counts.txt

calculate_scores --databases-dir=databases/ --samples-file=cyramza_normalized_counts.txt

It will create a result file sandbox\pal.csv.

Alternatively, you can use it as a library in your source code. For details lease see examples directory.

These details have not been verified by PyPI

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

1.3.0

Dec 4, 2023

1.2.3

Apr 15, 2021

1.2.2

Apr 15, 2021

1.2.1

Apr 8, 2021

1.2.0

Mar 2, 2021

This version

1.1.0

Dec 30, 2020

1.0.0

Dec 30, 2020

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Uploaded Dec 30, 2020 Source

Uploaded Dec 30, 2020 Python 3

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