Library for working with OBO Library Ontologies and associations

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Release history Release notifications | RSS feed

2.9.10

2.9.9

2.9.8

2.9.7

2.9.6

2.9.3

2.9.2

2.9.1

2.9.0

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

2.8.1

2.8.0

2.7.17

This version

2.7.16

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.9

2.7.8

2.7.7

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.2rc0 pre-release

2.7.1

2.7.0

2.6.4

2.6.3

2.6.2

2.6.1

2.6.0

2.5.1

2.5.0

2.4.1

2.4.0

2.3.0

2.2.0rc0 pre-release

2.1.2

2.1.1

2.1.0

2.0.0

2.0.0rc9 pre-release

2.0.0rc8 pre-release

2.0.0rc7 pre-release

2.0.0rc6 pre-release

2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

1.17.4

1.17.3

1.17.2

1.17.1

1.17.0

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.0

1.13.2

1.13.1

1.13.0

1.12.1

1.12.0

1.11.4

1.11.3

1.11.2

1.11.1

1.11.0

1.10.52

1.10.51

1.10.5

1.10.4

1.10.3

1.10.2

1.10.1

1.10.0

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.8.0

1.7.2

1.7.1

1.7.0

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.7

1.4.6

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.4.0

1.3.1

1.3.0

1.2.4

1.2.3

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

0.2.37

0.2.36

0.2.35

0.2.34

0.2.33

0.2.32

0.2.31

0.2.30

0.2.29

0.2.28

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.8

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-2.7.16.tar.gz (243.0 kB view details)

Uploaded Source

Built Distributions

ontobio-2.7.16-py3.6.egg (302.7 kB view details)

Uploaded Source

ontobio-2.7.16-py3-none-any.whl (309.6 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-2.7.16.tar.gz.

File metadata

  • Download URL: ontobio-2.7.16.tar.gz
  • Upload date:
  • Size: 243.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.16.tar.gz
Algorithm Hash digest
SHA256 d5db4109ead74b8b8992e21a71d130bb4ba0f19f9618fcf0171dd22f43012ec7
MD5 2d44fe719f61af4c8253ebdfc3ce5213
BLAKE2b-256 22cf4f2bbab5db61922bd73fdda7698c5e66e9482c8e494b2098e59f945ccd32

See more details on using hashes here.

File details

Details for the file ontobio-2.7.16-py3.6.egg.

File metadata

  • Download URL: ontobio-2.7.16-py3.6.egg
  • Upload date:
  • Size: 302.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.16-py3.6.egg
Algorithm Hash digest
SHA256 c1c057d107c0c44bc1a79cf61d1e03a96dacc19a3c988202c4884bdbca98861d
MD5 a1c2f696a1b7d8c7982c7995cc2d98e9
BLAKE2b-256 9000f4e97555d41c00f966070c37ac98da859a30b202f3dcca4b5809babd3614

See more details on using hashes here.

File details

Details for the file ontobio-2.7.16-py3-none-any.whl.

File metadata

  • Download URL: ontobio-2.7.16-py3-none-any.whl
  • Upload date:
  • Size: 309.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.16-py3-none-any.whl
Algorithm Hash digest
SHA256 e5b5eae361f1197b694cbfddf7ee262af9bf34e0cef6b3dfad1d0a9f98abab2b
MD5 9b6610c74ff8aa6b19b5969ad0f3f1e7
BLAKE2b-256 3a6101253f9b37ae6048b4cf57c44397dca22a663138ac96c0ae5352cd2979c3

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page