Library for working with OBO Library Ontologies and associations

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Release history Release notifications | RSS feed

2.9.10

2.9.9

2.9.8

2.9.7

2.9.6

2.9.3

2.9.2

2.9.1

2.9.0

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

2.8.1

2.8.0

2.7.17

2.7.16

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.9

2.7.8

This version

2.7.7

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.2rc0 pre-release

2.7.1

2.7.0

2.6.4

2.6.3

2.6.2

2.6.1

2.6.0

2.5.1

2.5.0

2.4.1

2.4.0

2.3.0

2.2.0rc0 pre-release

2.1.2

2.1.1

2.1.0

2.0.0

2.0.0rc9 pre-release

2.0.0rc8 pre-release

2.0.0rc7 pre-release

2.0.0rc6 pre-release

2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

1.17.4

1.17.3

1.17.2

1.17.1

1.17.0

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.0

1.13.2

1.13.1

1.13.0

1.12.1

1.12.0

1.11.4

1.11.3

1.11.2

1.11.1

1.11.0

1.10.52

1.10.51

1.10.5

1.10.4

1.10.3

1.10.2

1.10.1

1.10.0

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.8.0

1.7.2

1.7.1

1.7.0

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.7

1.4.6

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.4.0

1.3.1

1.3.0

1.2.4

1.2.3

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

0.2.37

0.2.36

0.2.35

0.2.34

0.2.33

0.2.32

0.2.31

0.2.30

0.2.29

0.2.28

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.8

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-2.7.7.tar.gz (229.6 kB view details)

Uploaded Source

Built Distributions

ontobio-2.7.7-py3.6.egg (286.7 kB view details)

Uploaded Source

ontobio-2.7.7-py3-none-any.whl (293.2 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-2.7.7.tar.gz.

File metadata

  • Download URL: ontobio-2.7.7.tar.gz
  • Upload date:
  • Size: 229.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.6.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.61.2 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.7.tar.gz
Algorithm Hash digest
SHA256 a17cc8e9143001a6d1c089fbba1b4dad61cc658941d0686311c222115f585a75
MD5 c88b47a1d7c15dd9c03ab723fcab3cfa
BLAKE2b-256 b64423958fb1eeb0e8334829db1d67105ba53775a7dc5b6c6da0741ec4916f4a

See more details on using hashes here.

File details

Details for the file ontobio-2.7.7-py3.6.egg.

File metadata

  • Download URL: ontobio-2.7.7-py3.6.egg
  • Upload date:
  • Size: 286.7 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.6.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.61.2 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.7-py3.6.egg
Algorithm Hash digest
SHA256 118a7e497771fe8c03dad554b99ca437d9f0b19ff325b03ae68e035ee3136f1a
MD5 ea1bac6292bf812c600e5748b50afc66
BLAKE2b-256 ef88ce7b8964cd4c6acb5fb1a86f37d678e646162e8683ac0199a3cb6905a7d4

See more details on using hashes here.

File details

Details for the file ontobio-2.7.7-py3-none-any.whl.

File metadata

  • Download URL: ontobio-2.7.7-py3-none-any.whl
  • Upload date:
  • Size: 293.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.6.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.61.2 CPython/3.6.5

File hashes

Hashes for ontobio-2.7.7-py3-none-any.whl
Algorithm Hash digest
SHA256 f9eef9e2945bef2be2111fb6351aa517f4e63054c3571d8eef7516b42a8724a8
MD5 e2b6ad63c60729545d080fba7ac159f9
BLAKE2b-256 a220eeb7798cfd3bc33ab1053cdcab0a958c8e2fd43342032f1dc704be367cff

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page