Library for working with OBO Library Ontologies and associations

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Project description

PyPI

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs

Notebooks

See the Jupyter Notebooks for code examples

Mailing list

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for cmungall from gravatar.com cmungall Avatar for deepakunni3 from gravatar.com deepakunni3 Avatar for dustine32 from gravatar.com dustine32 Avatar for kltm from gravatar.com kltm Avatar for mugitty from gravatar.com mugitty Avatar for smoxon from gravatar.com smoxon

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: BSD License (BSD)
  • Author: Chris Mungall
  • Tags ontology, graph, obo, owl, sparql, networkx, network
Classifiers

Release history Release notifications | RSS feed

2.9.10

2.9.9

2.9.8

2.9.7

2.9.6

2.9.3

2.9.2

2.9.1

2.9.0

2.8.25

2.8.24

2.8.23

2.8.22

2.8.21

2.8.20

2.8.19

2.8.18

2.8.17

2.8.16

2.8.15

2.8.14

2.8.13

2.8.12

2.8.11

2.8.10

2.8.9

2.8.8

2.8.7

2.8.6

2.8.5

2.8.4

2.8.3

2.8.2

This version

2.8.1

2.8.0

2.7.17

2.7.16

2.7.15

2.7.14

2.7.13

2.7.12

2.7.11

2.7.10

2.7.9

2.7.8

2.7.7

2.7.6

2.7.5

2.7.4

2.7.3

2.7.2

2.7.2rc0 pre-release

2.7.1

2.7.0

2.6.4

2.6.3

2.6.2

2.6.1

2.6.0

2.5.1

2.5.0

2.4.1

2.4.0

2.3.0

2.2.0rc0 pre-release

2.1.2

2.1.1

2.1.0

2.0.0

2.0.0rc9 pre-release

2.0.0rc8 pre-release

2.0.0rc7 pre-release

2.0.0rc6 pre-release

2.0.0rc5 pre-release

2.0.0rc4 pre-release

2.0.0rc3 pre-release

2.0.0rc2 pre-release

2.0.0rc1 pre-release

2.0.0rc0 pre-release

1.20.1

1.20.0

1.19.3

1.19.2

1.19.0

1.18.1

1.18.0

1.17.5

1.17.4

1.17.3

1.17.2

1.17.1

1.17.0

1.16.2

1.16.1

1.16.0

1.15.8

1.15.7

1.15.6

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.0

1.13.2

1.13.1

1.13.0

1.12.1

1.12.0

1.11.4

1.11.3

1.11.2

1.11.1

1.11.0

1.10.52

1.10.51

1.10.5

1.10.4

1.10.3

1.10.2

1.10.1

1.10.0

1.9.4

1.9.3

1.9.2

1.9.1

1.9.0

1.8.0

1.7.2

1.7.1

1.7.0

1.6.3

1.6.2

1.6.1

1.6.0

1.5.2

1.5.1

1.5.0

1.4.7

1.4.6

1.4.5

1.4.4

1.4.3

1.4.2

1.4.1

1.4.0

1.3.1

1.3.0

1.2.4

1.2.3

1.1.4

1.1.3

1.1.2

1.1.1

1.1.0

1.0.4

1.0.3

1.0.2

1.0.1

1.0.0

0.2.37

0.2.36

0.2.35

0.2.34

0.2.33

0.2.32

0.2.31

0.2.30

0.2.29

0.2.28

0.2.27

0.2.26

0.2.25

0.2.24

0.2.23

0.2.22

0.2.21

0.2.20

0.2.19

0.2.18

0.2.17

0.2.16

0.2.15

0.2.14

0.2.13

0.2.12

0.2.11

0.2.10

0.2.9

0.2.8

0.2.7

0.2.6

0.2.5

0.2.4

0.2.3

0.2.2

0.2.1

0.1.6

0.1.5

0.1.4

0.1.3

0.1.2

0.1.1

0.1.0

0.0.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

ontobio-2.8.1.tar.gz (243.8 kB view details)

Uploaded Source

Built Distributions

ontobio-2.8.1-py3.6.egg (303.4 kB view details)

Uploaded Source

ontobio-2.8.1-py3-none-any.whl (310.3 kB view details)

Uploaded Python 3

File details

Details for the file ontobio-2.8.1.tar.gz.

File metadata

  • Download URL: ontobio-2.8.1.tar.gz
  • Upload date:
  • Size: 243.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.8.1.tar.gz
Algorithm Hash digest
SHA256 078a40e634bfacd6ce5e6b6ae936fe7b0836b9831897a35adae0a8b90e52e10f
MD5 a067be32933fa8f5d45a807864deddfe
BLAKE2b-256 cd555605014e1cc9526065331cda504a75e1243ed844957c640bd9516dd1bd3f

See more details on using hashes here.

File details

Details for the file ontobio-2.8.1-py3.6.egg.

File metadata

  • Download URL: ontobio-2.8.1-py3.6.egg
  • Upload date:
  • Size: 303.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.8.1-py3.6.egg
Algorithm Hash digest
SHA256 ff2dd218febca5953a4da6118614a129549b57787cc12cafffdb34e2f32f1eda
MD5 ea26e2647d9ff45d023636b340fe4b35
BLAKE2b-256 cb29af5d475989fd767df6178026b745c6c10a1212f3f1bfecdd360bd5c872d0

See more details on using hashes here.

File details

Details for the file ontobio-2.8.1-py3-none-any.whl.

File metadata

  • Download URL: ontobio-2.8.1-py3-none-any.whl
  • Upload date:
  • Size: 310.3 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.6.0 importlib_metadata/4.8.2 pkginfo/1.8.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.5

File hashes

Hashes for ontobio-2.8.1-py3-none-any.whl
Algorithm Hash digest
SHA256 fdc94cd3c9ac694cadb193ee655ccb24afd0c0c80cff369ef2f58909994b1a0f
MD5 723faea0e984b0ccd9085f2efbf5579a
BLAKE2b-256 714bb4b7533491eeec643c6299ddc228deb86239b9f81a4ed42aa1ab95fff38d

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page