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An open-source platform for programmatically interacting with and managing Nucleic acid sequences synthesis processes.

Project description

OpenOligo

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OpenOligo is an open-source platform for programmatically interacting with and managing DNA synthesis processes.

Getting Started

pip install openoligo

A simple Example

import asyncio

from openoligo.instrument import Instrument
from openoligo.protocols.dna_synthesis import synthesize
from openoligo.seq import Seq


inst = Instrument()

try:
    asyncio.run(synthesize(inst, Seq("ATCGAAATTTTT")))
except KeyboardInterrupt:
    print("Keyboard interrupt received, exiting...")

Firmware

The firmware for OpenOligo is composed of

  • OpenOligo Library
  • API server (part of OpenOligo Library)
  • In a minimal linux image (OligoOS)

Project details


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