Skip to main content

OpenOmics provides a bioinformatics API and web-app platform integrate and visualize the multiomics and clinical data.

Project description

OpenOmics

https://img.shields.io/pypi/v/OpenOmics.svg https://img.shields.io/travis/JonnyTran/OpenOmics.svg https://codecov.io/gh/JonnyTran/OpenOmics/branch/master/graph/badge.svg Documentation Status Updates

OpenOmics provides a bioinformatics API and web-app platform integrate, analyze, and visualize the multi-omics and clinical data.

Features

  • Provides a bioinformatics workflow to generate integrative results from multi-omics data.
  • Facilitates integration of various bio-databases, multi-omics expression, genomics, and clinical data.
  • Highly flexible to different data types and missing data.
  • Provides researchers with means to consistently store and explore their experimental datasets.
  • Enables scalable performance with parallel computing, while easily configurable to deploy on both single machine and a cluster. (Pending)
  • Usable by both developers and scientists with its intuitive Python API and web-app dashboard interface.

Credits

This package was created with Cookiecutter and the pyOpenSci/cookiecutter-pyopensci project template, based off audreyr/cookiecutter-pypackage.

History

0.8.0 (Pending)

  • Replace Pandas Dataframe with Dask DataFrame for parallel processings
  • Build web-app interface for importing user multiomics data files

0.7.2 (2019-09-01)

  • Added compatibility for Python 2.7
  • Refactored ClinicalData
  • Built working documentations with Sphinx on readthedocs
  • Added pytests for MultiOmicsData
  • First successful build on Travis CI on Python 3.4-3.7, 2.7

0.6.0 (2019-08-31)

  • First release on PyPI.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for openomics, version 0.7.7
Filename, size File type Python version Upload date Hashes
Filename, size openomics-0.7.7-py2.py3-none-any.whl (18.8 kB) File type Wheel Python version py2.py3 Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page