openomics 0.7.6

OpenOmics provides a bioinformatics API and web-app platform integrate and visualize the multiomics and clinical data.

OpenOmics

OpenOmics provides a bioinformatics API and web-app platform integrate, analyze, and visualize the multi-omics and clinical data.

• Free software: MIT license

• Documentation: https://openomics.readthedocs.io.

Features

• Provides a bioinformatics workflow to generate integrative results from multi-omics data.

• Facilitates integration of various bio-databases, multi-omics expression, genomics, and clinical data.

• Highly flexible to different data types and missing data.

• Provides researchers with means to consistently store and explore their experimental datasets.

• Enables scalable performance with parallel computing, while easily configurable to deploy on both single machine and a cluster. (Pending)

• Usable by both developers and scientists with its intuitive Python API and web-app dashboard interface.

Credits

This package was created with Cookiecutter and the pyOpenSci/cookiecutter-pyopensci project template, based off audreyr/cookiecutter-pypackage.

History

0.8.0 (Pending)

• Replace Pandas Dataframe with Dask DataFrame for parallel processings

• Build web-app interface for importing user multiomics data files

0.7.2 (2019-09-01)

• Added compatibility for Python 2.7

• Refactored ClinicalData

• Built working documentations with Sphinx on readthedocs

• Added pytests for MultiOmicsData

• First successful build on Travis CI on Python 3.4-3.7, 2.7

0.6.0 (2019-08-31)

• First release on PyPI.