[![PyPI version](https://badge.fury.io/py/opentargets-ontologyutils.svg)](https://badge.fury.io/py/opentargets-ontologyutils)

[![Build Status](https://travis-ci.com/opentargets/ontology-utils.svg?branch=master)](https://travis-ci.com/opentargets/ontology-utils)

[![codecov](https://codecov.io/gh/opentargets/ontology-utils/branch/master/graph/badge.svg)](https://codecov.io/gh/opentargets/ontology-utils)

Python package with a set of utilities to:

  • download latest version of specific ontologies (tested on EFO, ECO, HP, MP)

  • extract information from ontology OBO and OWL file format

  • query this information from memory

  • map ontology identifiers to other ontology identifiers

  • map ontology labels to relevant ontology identifiers

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (1.2.4)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for opentargets from gravatar.com opentargets

Credits

Author: OpenTargets Core Team <support@targetvalidation.org>

License

Apache Software License (Apache License, Version 2.0)

Tags

opentargets bioinformatics ontology

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

opentargets-ontologyutils-1.0.0.tar.gz (24.9 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

opentargets_ontologyutils-1.0.0-py3-none-any.whl (34.5 kB view details)

Uploaded Python 3

File details

Details for the file opentargets-ontologyutils-1.0.0.tar.gz.

File metadata

  • Download URL: opentargets-ontologyutils-1.0.0.tar.gz
  • Upload date:
  • Size: 24.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.19.1 setuptools/40.4.3 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.6

File hashes

Hashes for opentargets-ontologyutils-1.0.0.tar.gz
Algorithm Hash digest
SHA256 d3aaf98c89852ed8c99f085276bc65210cd3b9502afb33d2df2b75de0708538c
MD5 3202bb10782564b4bff86507d40cbafa
BLAKE2b-256 c805543f89240d8b69c8400de12ccfdccaa579e689375e377f28faa5c72e9e3d

See more details on using hashes here.

File details

Details for the file opentargets_ontologyutils-1.0.0-py3-none-any.whl.

File metadata

  • Download URL: opentargets_ontologyutils-1.0.0-py3-none-any.whl
  • Upload date:
  • Size: 34.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.19.1 setuptools/40.4.3 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.6

File hashes

Hashes for opentargets_ontologyutils-1.0.0-py3-none-any.whl
Algorithm Hash digest
SHA256 932b741070a83d1011b850b769f1e25563183544d4b5d4c56a8c595e788da98d
MD5 0fe5a54f4076928a08ab791486ec4a48
BLAKE2b-256 475989f688c927c3b46179458fe8c1d55a37f1f0f2f900de76c1c7de8a14b595

See more details on using hashes here.

Release history Release notifications | RSS feed

1.2.4

3 files

1.2.3

3 files

1.2.2

3 files

1.2.1

3 files

1.2.0

3 files

1.1.0

3 files

This release

1.0.0 This release

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page