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an independent demo of KNOWN operon predict method

Project description

PyPI version Docs License


  • Python3.6

  • Numpy

  • Pandas

  • Linux(Fedora)



$ pip3 install operondemmo --user

or download operondemmo and install:

$ pip3 install operondemmo-*.tar.gz --user

To upgrade to latest version:

$ pip3 install --upgrade operondemmo --user


$ git clone
$ cd operondemmo
$ python3 install

or download and install:

$ pip install operondemmo-*.tar.gz


Quick start

$ git clone
$ cd operondemmo/test/count && tar -zxf count.tar.gz
$ rm -f count.tar.gz
$ cd ..
$ operondemmo -i count -g gff/eco.gff

Outputs: test/OUT/operon.txt

Basic Parameters


PRINT_HELP (show this help message and exit)


INPUT_FILES (A directory to store a group of result files through [samtools depth XXX > xxx.txt] command)


OUTPUT_PATH (A directory include output data(operon file).)


GFF_FILE (The gff file of the prokaryote)


THRESHOLD (the threshold in (-1,1))

Advanced Parameters


Build co-expression matrix with person correlation


Build co-expression matrix with spearman correlation

  1. Junier I, Unal E B, Yus E, et al. Insights into the mechanisms of basal coordination of transcription using a genome-reduced bacterium[J]. Cell systems, 2016, 2(6): 391-401.

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operondemmo-0.0.5.tar.gz (22.1 kB view hashes)

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