optipyzer 0.4.1

Codon optimize DNA and Protein sequences for multiple species.

Optipyzer

optipyzer is a lightweight python package that interfaces the core opitpyzer server for use inside python programs. It lets you codon optimize any DNA or protein sequences inside python by providing a convenient API to construct and make requests to the optimization server. It returns the results as python objects for downstream use.

Installation

pip install optipyzer

Quick Start

To get started, simply create an API instance, and start making requests:

import optipyzer

api = optipyzer.API()

gblock = "ATGGCCCTTTAA"

result = api.optimize(
        seq=dna_seq,
        seq_type="dna",
        weights={"human": 2, "mouse": 1},
    )

print(result['optimized_sd'])

More Information

For a more detailed tutorial, please visit the docs