Skip to main content

Codon optimize DNA and Protein sequences for multiple species.

Project description

Optipyzer

optipyzer is a lightweight python package that interfaces the core opitpyzer server for use inside python programs. It lets you codon optimize any DNA or protein sequences inside python by providing a convenient API to construct and make requests to the optimization server. It returns the results as python objects for downstream use.

Installation

pip install optipyzer

Quick Start

To get started, simply create an API instance, and start making requests:

import optipyzer

api = optipyzer.API()

gblock = "ATGGCCCTTTAA"

result = api.optimize(
        seq=dna_seq,
        seq_type="dna",
        weights={"human": 2, "mouse": 1},
    )

print(result['optimized_sd'])

More Information

For a more detailed tutorial, please visit the docs

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

optipyzer-0.4.1.tar.gz (5.4 kB view hashes)

Uploaded source

Built Distribution

optipyzer-0.4.1-py3-none-any.whl (6.7 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page