Optipyzer
optipyzer is a lightweight python package that interfaces the core opitpyzer server for use inside python programs. It lets you codon optimize any DNA or protein sequences inside python by providing a convenient API to construct and make requests to the optimization server. It returns the results as python objects for downstream use.
Installation
pip install optipyzer
Quick Start
To get started, simply create an API instance, and start making requests:
import optipyzer
api = optipyzer.API()
gblock = "ATGGCCCTTTAA"
result = api.optimize(
seq=dna_seq,
seq_type="dna",
weights={"human": 2, "mouse": 1},
)
print(result['optimized_sd'])
More Information
For a more detailed tutorial, please visit the docs
1 maintainer
Metadata
1 maintainer
Release files for optipyzer 0.4.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| optipyzer-0.4.1.tar.gz | 5.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| optipyzer-0.4.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 12.1 kB
Release files / optipyzer-0.4.1.tar.gz
| Download URL | optipyzer-0.4.1.tar.gz |
|---|---|
| Size | 5.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / optipyzer-0.4.1-py3-none-any.whl
| Download URL | optipyzer-0.4.1-py3-none-any.whl |
|---|---|
| Size | 6.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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| Uploaded via |
twine/4.0.2 CPython/3.11.0
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