Ollivier-Ricci curvature for -omic network analysis

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  • License: GNU General Public License v3 or later (GPLv3+)
  • Author: Anish Simhal
  • Requires: Python >=3.8
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Project description

ORC-Omics

Welcome to ORCO: Ollivier-Ricci curvature for omic data analysis. Details about the tool and implementation are found at [insert biorxiv link].

How to install

ORCO can be installe via pip: pip install orco

Examples (jupyter notebook)

  • Example 1: This illustrates ORCO on nodal values using a toy 6-node network
  • Example 2: This illustrates ORCO on a 90 node network incoporating edges from the Human Protein Reference Database and RNA-seq data from the MMRF CoMMpass dataset.

Issues

For any issues, please feel free to contact Anish (aksimhal [at] gmail) or open an issue.

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for aksimhal from gravatar.com aksimhal

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GNU General Public License v3 or later (GPLv3+)
  • Author: Anish Simhal
  • Requires: Python >=3.8
Classifiers

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0.1.2

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