origamipy 1.1.2

Python package for analysis, visualization, and support for the LatticeDNAOrigami simulation program.

Supporting python modules for the LatticeDNAOrigami simulation program

Python package for analysis, visualization, and support for the LatticeDNAOrigami simulation program. This package is part of the replication package for Ref. 1.

Some example scripts for creating plots are provided in the scripts directory.

Installation

This package was developed and used on Linux. It is available on the PyPI respository. It can be installed by running

pip install origamipy

If you do not have root access and it does not automatically default to installing locally, the --user flag may be used. To install directly from this repository, run

python -m build
pip install dist/origamipy-[current version]-py3-none-any.whl

To run the above, it may be necessary to update a few packages:

python3 -m pip install --upgrade pip setuptools wheel

For more information on building and installing python packages, see the documentation from the Python Packaging Authority.

References

[1] A. Cumberworth, D. Frenkel, and A. Reinhardt, Simulations of DNA-origami self-assembly reveal design-dependent nucleation barriers (2022).

Links

Paper

Replication package

LatticeDNAOrigami

Python Packaging Authority