Skip to main content

A program for counting CFUs in petri dishes

Project description

# p-tree 0.1.14

## About
```
This package is used to count the CFUs in petri dishes.
In order to use it you must provide it with a shared dropbox link to a directory containing the images in a png format.
Only images must be contained in the directory no subdirectories.
```


### Installation
```
This package requires python==3.6

to install type:

pip install p-tree

or

pip install --upgrade p-tree
```


### Example Script


```python
from p_tree.run import CountColonies

if __name__ == '__main__':
url = 'https://www.dropbox.com/sh/vq4wb9fd9k1fz49/AADLR3IIgj8lMWs8m9QLzdPoa?dl=1'
cc = CountColonies(url=url)
dfs = cc.main()
print(dfs)
```

# IMPORTANT (for now)

At the end of your dropbox-link it says **?dl=0**. change it to **?dl=1**.

# TODO

1. Provide rotate angle option and number of rotations.
2. Accept directory as input and not only dropbox shared link.
3. Save DataFrames to csv.
4. Output analytics such as bell curves (mean and std) for all petries.


Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distributions

No source distribution files available for this release.See tutorial on generating distribution archives.

Built Distribution

p_tree-0.1.16-py2.py3-none-any.whl (8.6 kB view details)

Uploaded Python 2 Python 3

File details

Details for the file p_tree-0.1.16-py2.py3-none-any.whl.

File metadata

File hashes

Hashes for p_tree-0.1.16-py2.py3-none-any.whl
Algorithm Hash digest
SHA256 8304feffb57cd73b1f6dab8b2b3a8663f5fcdc52a676026f75370b8e5f670401
MD5 1238a38d5c3318f3ca928851a0c5e006
BLAKE2b-256 b7ef72bdf9816b0f72c390e198b350dd8b4772a10cc40384cd437b21d7fc7ba5

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page