Palmari provides a plugin to analyze PALM movies, as well as microscope recordings of other SMLM-based SPT modalities. Set up your pipeline on one file, run it on a folder !
Project description
Palmari
A processing pipeline for PALM movies analysis (pre-processing, localization, drift correction, tracking).
Check out the documentation to get started.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
You can install palmari via pip:
pip install palmari
To install latest development version :
pip install git+https://github.com/hippover/palmari.git
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the CeCILL license.
Issues
If you encounter any problems, please file an issue along with a detailed description.
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