papis-zotero 0.1.2

Interact with Zotero using papis

Zotero compatibility for papis

Installation

To install the latest release from PyPI

python -m pip install papis-zotero

To install the latest development version

python -m pip install papis-zotero@https://github.com/papis/papis-zotero.git#egg=papis-zotero

Development

This project uses setup.py and setuptools for its build system. To develop the code, it is recommended to start up a virtual environment and install the project in editable mode using, e.g.:

python -m pip install -e '.[develop]'

After installation always check that the command is correctly recognized, e.g. by looking at the help output

papis zotero --help

Importing from BibTeX

Zotero supports exporting different variants of BibTeX or BibLaTeX files (from Files > Export Library). The resulting bib file can be directly imported into papis using

papis bibtex read library.bib import --all

but a better choice is using this command, as it has better support for special Zotero fields. To import a given exported library run

papis zotero import --from-bibtex library.bib

BibTeX files exported by Zotero can also include has some PDF entries, e.g. they can look like

@article{Einstein1905Photon,
    author = { A. Einstein },
    doi = { 10.1002/andp.19053220607 },
    journal = { Ann. Phys. },
    pages = { 132--148 },
    title = { Über einen die Erzeugung und Verwandlung des Lichtes
        betreffenden heuristischen Gesichtspunkt },
    file = { Full Text:path/to/some/relative/file.pdf },
    volume = { 322 },
    year = { 1905 },
}

From this, papis-zotero will interpret the path of the file entry as a relative path to library.bib passed to the import command using --from-bibtex. The files are skipped if they do not exist at the expected location.

By default, papis-zotero will add the documents to your current library. When initially importing a big library, it is recommended to always import it into a scratch folder, so that you can check the import. This can be easily done using

papis zotero import --from-bibtex library.bib --outfolder some/folder/lib

When you are ready you can move this folder to a final papis library.

Importing from Zotero SQLite

Zotero also maintains a database of all its files and collections under a zotero.sqlite file. You can check where this file is located by going to Edit > Preferences > Advanced > Data Directory Location (may vary depending on the Zotero version). The Zotero data directory should contain the zotero.sqlite file and a storage directory with the files for each document.

The SQLite database maintained by Zotero can be imported directly (without using a BibTeX export) by papis-zotero. This can be done by passing

papis zotero import --from-sql-folder <ZOTERO_DATA_DIRECTORY>

where ZOTERO_DATA_DIRECTORY is the folder containing the zotero.sqlite file. By default, papis-zotero will add the imported documents to your current library directory, but it can be customized using the --outfolder argument.

Using Zotero connectors

This plugin can also connect to a Zotero connector browser plugin. First, one such plugin should be installed from the Zotero website. Then, make sure that Zotero itself is not running (and connected to the connector) and run

papis zotero serve

to start listening to your browser for incoming data. Whenever you click the Zotero button to add a paper, papis-zotero will add this paper to its library instead.