Skip to main content

Project which enable automatic downloading data from pfam and rfam databases

Project description

# PARS (PfAm bRowSer) ## Description PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. One of the advantages of this package is the easy switch to other databases by translation of accession numbers. All of these features enable to make a detailed analysis of proteins or RNA families and deal with large datasets. ## Installation

PARS can be installed with pip:

` $ python -m pip install PARS ` Alternatively, you can grab the latest source code from GitHub:

` $ git clone git: https://github.com/JuliaGol/PARS.git $ python setup.py install `

If you want to use functions: automatic_search, hmmpress, hmmscan, hmmsearch you have to install HAMMER tools additionally. For more information about HAMMER see: [hmmer.org](http://hmmer.org). ## Documentation To read the documentation click here: [documentation](https://owczarekp.github.io/PARS/ ) ## Examples To go step by step see wiki.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

PARS-0.1.4.tar.gz (17.3 kB view hashes)

Uploaded Source

Built Distribution

PARS-0.1.4-py3-none-any.whl (23.5 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page