A modular approach for preprocessing and deep learning on histopathology images.
Project description
Welcome to PathFlowAI 👋
A Convenient High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
🏠 Homepage
NOTE: MedRxiv manuscript and set-up wiki will be posted on this repository shortly! Stay tuned!
Install
First, install openslide.
pip install pathflowai
Usage
pathflowai-preprocess -h
pathflowai-train_model -h
pathflowai-monitor -h
pathflowai-visualize -h
See Wiki for more information on setting up and running the workflow.
Author
👤 Joshua Levy
- Github: @jlevy44
🤝 Contributing
Contributions, issues and feature requests are welcome!
Feel free to check issues page.
Release history Release notifications | RSS feed
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