The workflow management system for scalable data analyses.
Project description
PBS-builder
A simplified version of workflow management system for scalable data analysis.
Change log
- Version 0.4.1: auto-switch to corresponding pbs_server for qbatch
- Version 0.4.0: merge qcancel into qbatch commands, change API
- Version 0.3.1: add allocated/total gpus in
pestat
output - Version 0.3.0: include
pestat
in package data - Version 0.2.0: move
sample_sheet
from header to job section, addgroup_sheet
support. - Version 0.1.0: first functional version.
Usage
pbs-builder
include two commands:
Please refer to our wiki for detailed instructions.
Installation
pbs-builder is heavily inspired by Snakemake, but uses native SLURM/Torque dependencies to build analysis pipeline.
pbs-builder runs in python3.7+ with the tomli
package installed, no other dependencies are required.
Install pbs-builder using the following command:
pip install pbs-builder
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