PBxplore is a suite of tools dedicated to Protein Block analysis.
PBxplore is a suite of tools dedicated to Protein Block (PB) analysis. Protein Blocks are structural prototypes defined by de Brevern et al. The 3-dimensional local structure of a protein backbone can be modelized as an 1-dimensional sequence of PBs. In principle, any conformation of any amino acid could be represented by one of the sixteen available Protein Blocks (see Figure 1).
Figure 1. Schematic representation of the sixteen protein blocks, labeled from a to p (Creative commons 4.0 CC-BY).
PBxplore provides both a Python library and command-line tools. Basically, PBxplore can:
Optionally, PBxplore can use:
Once dependencies installed, the most straightforward way is to use pip:
$ pip install pbxplore
PBxplore can also be installed for the current user only:
$ pip install --user pbxplore
All documentation are hosted by Read The Docs and can be found here.
PBxplore is a research software and has been developped by:
If you want to report a bug, request a feature, use the GitHub issue system.
PBxplore is licensed under The MIT License.