pdb2af downloads AF2 predictions that overlap with PDB structures
Project description
pdb2af v0.0.20
pdb2af uses SIFTS (https://www.ebi.ac.uk/pdbe/docs/sifts/) to download protein structures from the AlphaFold Protein Structure Database that overlap with PDB structures.
Installation
pdb2af is installed using pip (https://packaging.python.org/en/latest/tutorials/installing-packages/).
pip install pdb2af
Running pdb2af
pdb2af reads in a text file with PDB IDs. You need to be connected to the internet.
pdb2af -i pdb_ids.txt
Options:
-i text file with list of PDB IDs
-u update the SIFTS mapping between PDB IDs and UniProt accession numbers
Help
Contact Nick Fowler (njfowler.com) for support, queries or suggestions.
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