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pdb2af downloads AF2 predictions that overlap with PDB structures

Project description

pdb2af v0.0.20

pdb2af uses SIFTS ( to download protein structures from the AlphaFold Protein Structure Database that overlap with PDB structures.


pdb2af is installed using pip (

pip install pdb2af

Running pdb2af

pdb2af reads in a text file with PDB IDs. You need to be connected to the internet.

pdb2af -i pdb_ids.txt


-i text file with list of PDB IDs

-u update the SIFTS mapping between PDB IDs and UniProt accession numbers


Contact Nick Fowler ( for support, queries or suggestions.

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