PDB parser using SQL queries
Project description
PDB2SQL
PDB2SQL is a Python package that allows to use SQL queries to handle PDB files. This project grew out of the developement of DeepRank.
- Source code: https://github.com/DeepRank/pdb2sql
- Documentation: https://pdb2sql.readthedocs.io
It provides:
- a powerful
pdb2sqlobject to manipulate PDB data in SQL database - strcuture transformation functions (rotations, translations...)
- useful capablities to
- calculate structure interface (contact atoms and residues)
- calculate structure similarity (iRMSD, lRMSD, FNAT, DockQ...)
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