perGENIE is a Web/CUI application for personal genome interpretation.
Project description
[perGENIE](http://pergenie.org) is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.
## Quick Start (For non-developers)
Without installation, just download this repository and run:
$ python ./pergenie [command] [options]
## Usage Examples
To run Disease Risk Report:
- $ python ./pergenie riskreport -I example/vcf_whole_genome.vcf
-F vcf_whole_genome -P Asian
For developpers,
## How to Install
If you are familier with Python Package Index ([pip](https://pypi.python.org/pypi/pip)), install via pip:
$ pip install pergenie
Or clone this repository, then, install by setup script:
$ python setup.py install
## How to run test
$ python setup.py test
## How to contribute
Pull requests are welcome! Feel free to contact me :)
## Lisence
GPL version 3 or later
2012-2014 Kensuke NUMAKURA
# CHANGELOG
version 0.1.0 - Initial release
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