pergenie 0.1.1

perGENIE is a Web/CUI application for personal genome interpretation.

[perGENIE](http://pergenie.org) is a Web/CUI application for personal genome interpretation. This repository contains the core utils of perGENIE, such as Disease Risk Report.

## Quick Start (For non-developers)

Without installation, just download this repository and run:

$ python ./pergenie [command] [options]

## Usage Examples

To run Disease Risk Report:

$ python ./pergenie riskreport -I example/vcf_whole_genome.vcf

-F vcf_whole_genome -P Asian

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For developpers,

## How to Install

If you are familier with Python Package Index ([pip](https://pypi.python.org/pypi/pip)), install via pip:

$ pip install pergenie

Or clone this repository, then, install by setup script:

$ python setup.py install

## How to run test

$ python setup.py test

## How to contribute

Pull requests are welcome! Feel free to contact me :)

## Lisence

GPL version 3 or later

3. 2012-2014 Kensuke NUMAKURA

# CHANGELOG

• version 0.1.0 - Initial release

• version 0.1.1 - Update readme