Skip to main content

Parameter estimation tabular data

Project description

CI Codacy Badge codecov PyPI version

petab - a Python package for handling PEtab files

PEtab is a data format for specifying parameter estimation problems in systems biology. This repository provides the petab Python package for reading, writing and validating PEtab files.

Documentation

Documentation of the petab Python package is available at https://libpetab-python.readthedocs.io/en/latest/. Documentation of the PEtab format in general is available at https://petab.readthedocs.io/en/latest/.

Installation

The PEtab library is available on pypi and the easiest way to install it is running

pip3 install petab

It will require Python>=3.7.1 to run.

Development versions of the PEtab library can be installed using

pip3 install https://github.com/PEtab-dev/libpetab-python/archive/develop.zip

(replace develop by the branch or commit you would like to install).

When setting up a new parameter estimation problem, the most useful tools will be:

Examples

Examples for PEtab Python library usage:

Getting help

If you have any question or problems with this package, feel free to post them at our GitHub issue tracker.

Contributing

Contributions and feedback to this package are very welcome, see our contribution guide.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

petab-0.1.19.tar.gz (72.1 kB view details)

Uploaded Source

Built Distribution

petab-0.1.19-py3-none-any.whl (82.2 kB view details)

Uploaded Python 3

File details

Details for the file petab-0.1.19.tar.gz.

File metadata

  • Download URL: petab-0.1.19.tar.gz
  • Upload date:
  • Size: 72.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.3.0 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.61.0 CPython/3.8.10

File hashes

Hashes for petab-0.1.19.tar.gz
Algorithm Hash digest
SHA256 b3931bfc69fa92bb1e7f0e90249d230ee779f310bbe094602ed2315e641d26ca
MD5 6d41214a2ae7496f82e548d1b62d2991
BLAKE2b-256 ecf2714c0465383ba0e3fd9001115bc8950291348bbd60b76a5d6fc92a3fadc8

See more details on using hashes here.

File details

Details for the file petab-0.1.19-py3-none-any.whl.

File metadata

  • Download URL: petab-0.1.19-py3-none-any.whl
  • Upload date:
  • Size: 82.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.3.0 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.61.0 CPython/3.8.10

File hashes

Hashes for petab-0.1.19-py3-none-any.whl
Algorithm Hash digest
SHA256 24fa917664e7eff2b73ef7d4657694d8bd31f078030c9e472fd61a18f07099fd
MD5 4af1611f280bc866ee057a241646c4e3
BLAKE2b-256 4fe9d8a3fc2b66a32196717bf833b949239f9467e2ae8b49c9b11b41c4270892

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page