Peptidoglycan analysis
Project description
PGFinder
A web-site for processing samples is available at PGFinder. For descriptions of the features of each version please refer to the Releases page. If you wish to use the development version please refer to the Insatllation and Usage documentation.
For an introduction to Peptidoglycan analysis please refer to the documentation.
Usage
PGFinder is available in two forms a web-based User Interface (WebUI) at mesnage-org.github.io/pgfinder-gui/ or a command line interface (CLI) Python package.
Thecommand-line programme (find_pg
) uses a YAML configuration file as input.
find_pg -c config.yaml
For details of using the CLI version including the configuration file please refer to the Usage section of the Documentation.
Installation
Detailed installation instructions can be found in the Installation section of the Documentation.
PGFinder is available from PyPI so can be installed with pip
.
pip install pgfinder
It can also be installed directly from this repository
pip install git+https://github.com/Mesnage-Org/PGFinder.git
Or you can clone the repository and install it.
git clone https://github.com/Mesnage-Org/pgfinder.git
cd pgfinder
pip install -e .
Contributing
Contributions are welcome, please refer to the detailed
Contributing section of the Documentation which
details how to setup and install all components and setup/configure the development tools such as pre-commit
.
Copying
This software is licensed as specified by the GPL License and LGPL License. Please refer to the
COPYING
and
COPYING.LESSER files for further details.
Links
References
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for pgfinder-1.0.0rc1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b22b0fb02bde909661b074c3c26ed49b209595f4791a3d126cd7e77e8447b613 |
|
MD5 | d67ced5e1f845d3330db2662ddc8687e |
|
BLAKE2b-256 | 67cf5ac6ec5c5503a3093caaef2e7f362ba913bf7544ceec0258527e553b45bc |