This release is a pre-release and may not be stable for production use.
Phage Commander
A graphical utility for querying various gene prediction tools for FASTA formatted DNA sequences.
Overview
Phage Commander provides utilities to query various gene-encoding prediction tools and results in various formats.
The following gene-encoding prediction tools are currently supported:
- Glimmer
- Genemark
- Genemark Hmm
- GenemarkS
- GenemarkS2
- Genemark Heuristic
- Prodigal
- RAST
- Metagene
Supported exporting formats:
- Genbank
- Excel
Getting Started
Prerequisites
- Python 3.6+
Installing
Install via pip
pip install phage-commander
Install via pip and git
pip install git+https://github.com/mlazeroff/PhageCommander
Running
# on Windows
phagecom.exe
# on MacOS/Linux
phagecom
Note: The pip "Scripts" directory should be included your PATH variable.
Author
- Matthew Lazeroff
License
This project is licensed under the GNU GPLv3
1 maintainer
Metadata
1 maintainer
Release files for phage-commander 0.4.5.dev0
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| File | Size | Uploaded | Provenance | Actions |
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| phage-commander-0.4.5.dev0.tar.gz | 60.5 kB | Without provenance | Details for phage-commander-0.4.5.dev0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
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| phage_commander-0.4.5.dev0-py3-none-any.whl | Python 3 | none | any | Details for phage_commander-0.4.5.dev0-py3-none-any.whl |
Total release size: 125.7 kB
Release files / phage-commander-0.4.5.dev0.tar.gz
| Download URL | phage-commander-0.4.5.dev0.tar.gz |
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| Size | 60.5 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / phage_commander-0.4.5.dev0-py3-none-any.whl
| Download URL | phage_commander-0.4.5.dev0-py3-none-any.whl |
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| Size | 65.2 kB |
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