Pre-release
This release is a pre-release and may not be stable for production use.
Phage Commander
A graphical utility for querying various gene prediction tools for FASTA formatted DNA sequences.
Overview
Phage Commander provides utilities to query various gene-encoding prediction tools and results in various formats.
The following gene-encoding prediction tools are currently supported:
- Glimmer
- Genemark
- Genemark Hmm
- GenemarkS
- GenemarkS2
- Genemark Heuristic
- Prodigal
- RAST
- Metagene
Supported exporting formats:
- Genbank
- Excel
Getting Started
Prerequisites
- Python 3.6+
Installing
Install via pip
pip install phage-commander
Install via pip and git
pip install git+https://github.com/mlazeroff/PhageCommander
Running
# on Windows
phagecom.exe
# on MacOS/Linux
phagecom
Note: The pip "Scripts" directory should be included your PATH variable.
Author
- Matthew Lazeroff
License
This project is licensed under the GNU GPLv3
1 maintainer
Release files for phage-commander 0.4.5.dev0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| phage-commander-0.4.5.dev0.tar.gz | 60.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| phage_commander-0.4.5.dev0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 125.7 kB
Release files / phage-commander-0.4.5.dev0.tar.gz
| Download URL | phage-commander-0.4.5.dev0.tar.gz |
|---|---|
| Size | 60.5 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / phage_commander-0.4.5.dev0-py3-none-any.whl
| Download URL | phage_commander-0.4.5.dev0-py3-none-any.whl |
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| Size | 65.2 kB |
| Tags | Python 3 |
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twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.7.6
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