A graphical tool for predicting genes on phage DNA sequences
Project description
Phage Commander
A graphical utility for querying various gene prediction tools for FASTA formatted DNA sequences.
Overview
Phage Commander provides utilities to query various gene-encoding prediction tools and results in various formats.
The following gene-encoding prediction tools are currently supported:
- Glimmer
- Genemark
- Genemark Hmm
- GenemarkS
- GenemarkS2
- Genemark Heuristic
- Prodigal
- RAST
- Metagene
Supported exporting formats:
- Genbank
- Excel
Getting Started
Prerequisites
- Python 3.6+
Installing
Install via pip
pip install phage-commander
Install via pip and git
pip install git+https://github.com/mlazeroff/PhageCommander
Running
# on Windows
phagecom.exe
# on MacOS/Linux
phagecom
Note: The pip "Scripts" directory should be included your PATH variable.
Author
- Matthew Lazeroff
License
This project is licensed under the GNU GPLv3
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