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A graphical tool for predicting genes on phage DNA sequences

Project description

Phage Commander

A graphical utility for querying various gene prediction tools for FASTA formatted DNA sequences.

Overview

Phage Commander provides utilities to query various gene-encoding prediction tools and results in various formats.

The following gene-encoding prediction tools are currently supported:

  • Glimmer
  • Genemark
  • Genemark Hmm
  • GenemarkS
  • GenemarkS2
  • Genemark Heuristic
  • Prodigal
  • RAST
  • Metagene

Supported exporting formats:

  • Genbank
  • Excel

Getting Started

Prerequisites

  • Python 3.6+

Installing

Install via pip

pip install phage-commander

Install via pip and git

pip install git+https://github.com/mlazeroff/PhageCommander

Running

# on Windows
phagecom.exe
# on MacOS/Linux
phagecom

Note: The pip "Scripts" directory should be included your PATH variable.

Author

  • Matthew Lazeroff

License

This project is licensed under the GNU GPLv3

Project details


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