phage-commander 0.4.5.dev0

A graphical tool for predicting genes on phage DNA sequences

Phage Commander

A graphical utility for querying various gene prediction tools for FASTA formatted DNA sequences.

Overview

Phage Commander provides utilities to query various gene-encoding prediction tools and results in various formats.

The following gene-encoding prediction tools are currently supported:

• Glimmer
• Genemark
• Genemark Hmm
• GenemarkS
• GenemarkS2
• Genemark Heuristic
• Prodigal
• RAST
• Metagene

Supported exporting formats:

• Genbank
• Excel

Getting Started

Prerequisites

• Python 3.6+

Installing

Install via pip

pip install phage-commander

Install via pip and git

pip install git+https://github.com/mlazeroff/PhageCommander

Running

# on Windows
phagecom.exe

# on MacOS/Linux
phagecom

Note: The pip "Scripts" directory should be included your PATH variable.

Author

• Matthew Lazeroff

License

This project is licensed under the GNU GPLv3