phenobench 0.1.0

The official development kit of the PhenoBench dataset (www.phenobench.org).

PhenoBench Development Kit

PhenoBench is a large dataset and benchmarks for the semantic interpretation of images of real agricultural fields. Together with the dataset, we provide a development kit that provides:

• a framework-agnostic data loader.
• visualization functions for drawing our data format.
• evaluation scripts, phenobench-eval, for all tasks (also used on the CodaLab servers).
• validator, called phenobench-validator, checking CodaLab submission files for consistency

For more information on the dataset, please visit www.phenobench.org.

Getting started

1. Download the dataset.
2. Install the development kit: pip install phenobench.
3. Explore the data with the tutorial notebook.
4. See the code of our baselines as a starting point or train your own models.
5. See the FAQ for common questions and troubleshooting.

If you discover a problem or have general questions regarding the dataset, don't hesitate to open an issues. We will try to resolve your issue as quickly as possible.

Evaluation scripts (phenobench-eval)

Important: Install all dependencies with pip install "phenobench[eval]".

For evaluating and computing the metrics for a specific task, you can run the phenobench-eval tool as follows:

$ phenobench-eval --task <task> --phenobench_dir <dir> --prediction_dir <dir> --split <split>

• task is one of the following options: semantics, panoptic, leaf_instances, plant_detection, leaf_detection, or hierarchical.
• phenobench_dir is the root directory of the PhenoBench dataset, where train, val directories are located.
• prediction_dir is the directory containing the predictions as sub-folders, which depend on the specific tasks.
• split is either train or val.

Note that all ablation studies of your approach should run on the validation set. Thus, we also provide a comparably large validation set to enable a solid comparison of different settings of your approach.

CodaLab Submission Validator (phenobench-validator)

Before you submit a zip file to our CodaLab competitions, see also our available benchmarks, you can use the phenobench-validator to check your submission for consistency. The tool is also part of the pip package, therefore after installing the package via pip, you can call the phenobench-validator as follows:

$ phenobench-validator --task <task> --phenobench_dir <dir> --zipfile <zipfile>

• task is one of the following options: semantics, panoptic, leaf_instances, plant_detection, leaf_detection, or hierarchical.
• phenobench_dir is the root directory of the PhenoBench dataset, where train, val directories are located.
• zipfile is the zip file that you want to submit to the corresponding benchmark on CodaLab.

Frequently Asked Questions

Question: What are the usage restrictions of the PhenoBench dataset?
Answer: We distribute the dataset using the CC-BY-SA International 4.0 license, which allows research but also commercial usage as long as the dataset is properly attributed (via a citation of the corresponding paper) and distributed with the same license if altered or modified. See also our dataset overview page for the full license text, etc.