phenomic-ai 0.1.0

A minimal CLI/API tool which allows you to embed .h5ad files using PAIs (Phenomic AIs) pre-trained embedding model

pai_embeddings

Getting started

To make it easy for you to get started with GitLab, here's a list of recommended next steps.

Already a pro? Just edit this README.md and make it your own. Want to make it easy? Use the template at the bottom!

Add your files

• Create or upload files
• Add files using the command line or push an existing Git repository with the following command:

cd existing_repo
git remote add origin https://gitlab.com/phenomicai/pai_embeddings.git
git branch -M main
git push -uf origin main

Integrate with your tools

• Set up project integrations

Collaborate with your team

• Invite team members and collaborators
• Create a new merge request
• Automatically close issues from merge requests
• Enable merge request approvals
• Set auto-merge

Test and Deploy

Use the built-in continuous integration in GitLab.

• Get started with GitLab CI/CD
• Analyze your code for known vulnerabilities with Static Application Security Testing (SAST)
• Deploy to Kubernetes, Amazon EC2, or Amazon ECS using Auto Deploy
• Use pull-based deployments for improved Kubernetes management
• Set up protected environments

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Editing this README

When you're ready to make this README your own, just edit this file and use the handy template below (or feel free to structure it however you want - this is just a starting point!). Thanks to makeareadme.com for this template.

Suggestions for a good README

Every project is different, so consider which of these sections apply to yours. The sections used in the template are suggestions for most open source projects. Also keep in mind that while a README can be too long and detailed, too long is better than too short. If you think your README is too long, consider utilizing another form of documentation rather than cutting out information.

Name

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Description

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Badges

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Visuals

Depending on what you are making, it can be a good idea to include screenshots or even a video (you'll frequently see GIFs rather than actual videos). Tools like ttygif can help, but check out Asciinema for a more sophisticated method.

Installation

git clone [e-mail]:phenomicai/pai_embeddings.git # clone repo

python3 -m venv venv # init virtual environment source venv/bin/activate # activate virtual environment

python3 -m pip install . # install requirements

Usage

Use examples liberally, and show the expected output if you can. It's helpful to have inline the smallest example of usage that you can demonstrate, while providing links to more sophisticated examples if they are too long to reasonably include in the README.

Support

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Roadmap

If you have ideas for releases in the future, it is a good idea to list them in the README.

Contributing

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For people who want to make changes to your project, it's helpful to have some documentation on how to get started. Perhaps there is a script that they should run or some environment variables that they need to set. Make these steps explicit. These instructions could also be useful to your future self.

You can also document commands to lint the code or run tests. These steps help to ensure high code quality and reduce the likelihood that the changes inadvertently break something. Having instructions for running tests is especially helpful if it requires external setup, such as starting a Selenium server for testing in a browser.

Authors and acknowledgment

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Project status

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