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An open-source PHI-filtering software

Project description

Running Philter from the command line

Production Mode (no ground truth annotations required)

python3 -i "./data/i2b2_notes_test/" -o "./data/i2b2_results_test/" -f=./configs/ucsf_pipeline_test_map_regex_context.json --prod=True

Notes - this production mode will avoid outputting unnecessary print statements, and will skip the evaluation steps

Development Mode (ground truth annotations required)

python3 -i=./data/i2b2_notes/ -a=./data/i2b2_anno/ -o=./data/i2b2_results/ -f=./configs/ucsf_pipeline_test_map_regex_context.json

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