phydms

Phylogenetic analyses informed by deep mutational scanning data.

Project description

https://travis-ci.org/jbloomlab/phydms.svg?branch=master

phydms enables phylogenetic analyses using deep mutational scanning data to inform the substitution models. It implements Experimentally informed codon models (ExpCM) for phylogenetic inference and the detection of biologically interesting selection.

phydms is written by the Bloom lab (see https://github.com/jbloomlab/phydms/contributors for a full list of contributors).

See the phydms documentation for information about using phydms and details about the recommended installation process.

The phydms source code is freely available under a GPLv3 license.

If you use phydms, please cite it appropriately.

Project details

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This version

2.4.1

Apr 14, 2021

2.4.0

Nov 23, 2020

2.3.8

Jan 14, 2020

2.3.7

Jan 12, 2020

2.3.6

Nov 22, 2019

2.3.5

Nov 22, 2019

2.3.4

Nov 17, 2019

2.3.3

Jul 23, 2019

2.3.2

Jun 9, 2019

2.3.1

Jul 23, 2018

2.3.0

Jun 20, 2018

2.2.2

Mar 12, 2018

2.2.1

Jan 25, 2018

2.2.0

Oct 29, 2017

2.1.4

Oct 25, 2017

2.1.3

Oct 3, 2017

2.1.2

Sep 19, 2017

2.1.1

Sep 1, 2017

2.1.0

Aug 31, 2017

2.0.5

May 17, 2017

2.0.4

May 12, 2017

2.0.3

Apr 17, 2017

2.0.2

Apr 15, 2017

2.0.1

Mar 29, 2017

2.0.0

Mar 13, 2017

1.3.0

Oct 5, 2016

1.2.5

Aug 13, 2016

1.2.4

Jul 31, 2016

1.2.3

Jul 15, 2016

1.2.2

Apr 5, 2016

1.2.1

Mar 31, 2016

1.2.0

Mar 14, 2016

1.1.0

Feb 20, 2016

1.0.2

Jan 15, 2016

1.0.1

Jan 5, 2016

1.0.0

Jan 5, 2016

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