Phylogenetic analyses informed by deep mutational scanning data.
phydms enables phylogenetic analyses using deep mutational scanning data to inform the substitution models. It implements Experimentally informed codon models (ExpCM) for phylogenetic inference and the detection of biologically interesting selection.
See the phydms documentation for information about using phydms and details about the recommended installation process.
If you use phydms, please cite it appropriately.