MATT - A FRAMEWORK FOR MODIFYING AND TESTING TOPOLOGIES
Table of Contents
Installation
MATT is distributed as a python package called phylo-matt. MATT requires a Python version of 3.5 or higher.
Once python and the included package manager are installed, MATT can be installed using the pip command in a
console:
pip install phylo-matt
If you run into errors, try:
pip install phylo-matt --user
Usage
After MATT has been installed it can be launched using the matt command in a console:
matt
This will start MATT and open http://localhost:5000 in the preferred browser.
Once open MATT can be used via the GUI in the browser.
Make sure to set all the needed options under the options tab and import the alignment and tree files.
After a tree has been constructed or imported the tree can be viewed in the main window and under the overview tab, snapshots can be saved under the snapshots tab and different tree topologies can be tested under the test tab.
To close MATT again, simply kill the server by hitting Ctrl + C in the console.
Contribution
Any bug reports, comments and suggestions are highly appreciated. Please open an issue on GitHub or contact us via email.
License
MATT is licensed under the GNU General Public License v3.0.
Citation
An Application Note is in the works. Stay tuned.
Contact
For further support or bug reports please contact us via email.
1 maintainer
Metadata
1 maintainer
Release files for phylo-matt 1.0.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| phylo-matt-1.0.4.tar.gz | 13.1 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| phylo_matt-1.0.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 26.3 MB
Release files / phylo-matt-1.0.4.tar.gz
| Download URL | phylo-matt-1.0.4.tar.gz |
|---|---|
| Size | 13.1 MB |
| Tags | Source |
|
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No |
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twine/3.7.1 importlib_metadata/4.10.0 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.8.12
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Release files / phylo_matt-1.0.4-py3-none-any.whl
| Download URL | phylo_matt-1.0.4-py3-none-any.whl |
|---|---|
| Size | 13.2 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
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twine/3.7.1 importlib_metadata/4.10.0 pkginfo/1.8.2 requests/2.27.1 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.8.12
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