phys2bids 2.0.0

Python library to convert physiological data files into BIDS format

phys2bids

phys2bids is a python3 library meant to format physiological files in BIDS. It was born for AcqKnowledge files (BIOPAC), and at the moment it supports .acq files as well as .txt files obtained by labchart (ADInstruments). It doesn't support physiological files recorded with the MRI, as you can find a software for it here.

If you use phys2bids in your work, please cite it with the zenodo DOI as:

The phys2bids contributors, Daniel Alcalá, Apoorva Ayyagari, Molly Bright, César Caballero-Gaudes, Vicente Ferrer Gallardo, Soichi Hayashi, Ross Markello, Stefano Moia, Rachael Stickland, Eneko Uruñuela, & Kristina Zvolanek (2020, February 6). physiopy/phys2bids: BIDS formatting of physiological recordings v1.3.0-beta (Version v1.3.0-beta). Zenodo. http://doi.org/10.5281/zenodo.3653153

Read the latest documentation for more information on phys2bids!

Shortcuts:

• Requirements
• Installation
• Usage
• How to use phys2bids
• Contributing to phys2bids
• Developer installation
• Contributor guide
• Code of Conduct

The BrainWeb

BrainWeb participants, welcome! We have a milestone here as a collection of issues you could work on with our help. Check the issues with a BrainWeb label. Of course, they are only suggestions, so feel free to tackle any issue you want, even open new ones! You can also contact us on Gitter, in the BrainHack Mattermost (#physiopy), and don't hesitate to contact Stefano in other ways to jump in the development!

The project is currently under development. Any suggestion/bug report is welcome! Feel free to open an issue.

This project follows the all-contributors specification. Contributions of any kind welcome!

Contributors ✨

Thanks goes to these wonderful people (emoji key):

Daniel Alcalá 🎨	Apoorva Ayyagari 🔣 📖 🖋	Molly Bright 🔣 🤔 🖋	Cesar Caballero Gaudes 🔣 🤔 🖋	Vicente Ferrer 🐛 💻 📖 👀	Soichi Hayashi 🐛	Ross Markello 🐛 💻 🤔 🚇 👀 ⚠️
Stefano Moia 💻 🔣 🤔 🚇 📆 👀 📖 🖋	Rachael Stickland 🐛 🔣 📖 📓	Eneko Uruñuela 🐛 💻 🚇 👀 ⚠️	Kristina Zvolanek 🔣 📖 🖋

License

Copyright 2019, The Phys2BIDS community.

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.