phys2bids 2.6.0

Python library to convert physiological data files into BIDS format

phys2bids

phys2bids is a python3 library meant to format physiological files in BIDS. It was born for AcqKnowledge files (BIOPAC), and at the moment it supports .acq files as well as .txt files obtained by labchart (ADInstruments). It doesn't support physiological files recorded with the MRI, as you can find a software for it here.

If you use phys2bids in your work, please cite it with the zenodo DOI of the version you used. You can find the latest version here

We also support gathering all relevant citations via DueCredit.

Read the latest documentation for more information on phys2bids!

Shortcuts:

• Requirements
• Installation
• Usage
• How to use phys2bids
• Contributing to phys2bids
• Developer installation
• Contributor guide
• Code of Conduct
• Developer calls calendar

The BrainWeb

BrainWeb participants, welcome! We have a milestone here as a collection of issues you could work on with our help. Check the issues with a BrainWeb label. Of course, they are only suggestions, so feel free to tackle any issue you want, even open new ones! You can also contact us on Gitter, in the BrainHack Mattermost (#physiopy), and don't hesitate to contact Stefano in other ways to jump in the development!

We're looking for code contributors, but any suggestion/bug report is welcome! Feel free to open issues!

This project follows the all-contributors specification. Contributions of any kind welcome!

Contributors ✨

Thanks goes to these wonderful people (emoji key):

Daniel Alcalá 🎨	Apoorva Ayyagari 🖋 🔣 📖	Katie Bottenhorn 💻 🧑‍🏫 👀	Molly Bright 🖋 🔣 🤔
Cesar Caballero Gaudes 🖋 🔣 🤔	Inés Chavarría 💻	Vicente Ferrer 🐛 💻 📖 👀 ⚠️	Soichi Hayashi 🐛
Vittorio Iacovella 💻	François Lespinasse 💻 ⚠️	Ross Markello 🐛 💻 🖋 🤔 🚇 👀 ⚠️ 🧑‍🏫	Stefano Moia 💻 🖋 🔣 🤔 🚇 📆 👀 📖 🧑‍🏫
Robert Oostenveld 🤔 👀	Taylor Salo 🤔 💻 👀	Rachael Stickland 🐛 💻 🔣 📖 📓 👀	Eneko Uruñuela 🐛 💻 🚇 👀 ⚠️ 🧑‍🏫
merelvdthiel 💻	Kristina Zvolanek 🔣 🖋 📖	victox5 📖

License

Copyright 2019-2020, The Phys2BIDS community.

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.