picked-group-fdr 0.2.0

Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments

Picked Protein Group FDR

Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments

Running Picked Protein Group FDR using the GUI

On Windows, you can download the PickedGroupFDR_GUI_windows.zip from the latest release, unzip it and open PickedGroupFDR.exe to start the GUI (no installation necessary).

Alternatively, on all platforms, first install Picked Protein Group FDR as explained below. Then install PyQt5 (pip install PyQt5) and run:

python gui.py

Running Picked Protein Group FDR from the command line

First install Picked Protein Group FDR as explained below, then run:

python -m picked_group_fdr --mq_evidence </path/to/mq_evidence_txt> --fasta </path/to/fasta_file>

Installation

Picked Protein Group FDR is available on PyPI and can be installed with pip:

pip install picked_group_fdr

Alternatively, you can install directly from this repository:

git clone https://github.com/kusterlab/picked_group_fdr.git
pip install .