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Convert pileup to SAM

Project description

pileup2sam

A partial implementation of a pileup to SAM format conversion tool.

  • This is an inefficient and naive implementation, but it seems to do the trick.
  • Does not support indels!

Example usage

pileup2sam -r test/cases/simulated.fa test/cases/simulated.head100.pileup out.sam

Project details


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Files for pileup2sam, version 0.3.0
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