Convert pileup to SAM

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License: Apache Software License

Author: Warren W. Kretzschmar

Tags htslib, sam, bam, pileup, samtools

Requires: Python >=3.7, <4

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Project description

pileup2sam

A partial implementation of a pileup to SAM format conversion tool.

  • This is an inefficient and naive implementation, but it seems to do the trick.
  • Does not support indels!

Example usage

pileup2sam -r test/cases/simulated.fa test/cases/simulated.head100.pileup out.sam

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Meta

License: Apache Software License

Author: Warren W. Kretzschmar

Tags htslib, sam, bam, pileup, samtools

Requires: Python >=3.7, <4

Classifiers

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0.3.0

0.2.0

0.1.0

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pileup2sam-0.3.0.tar.gz (4.7 kB view hashes)

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