pipeline2app 0.16.0

Pipeline2App: a tool for quickly turning pipelines into containerised applications (e.g. BIDS Apps or XNAT pipelines)

Pipeline2App

Pipeline2App is a tool for quickly turning Pydra tasks and workflows into containerised applications (e.g. BIDS Apps or XNAT pipelines)

Documentation

Detailed documentation on Pipeline2App can be found at https://arcanaframework.github.io/pipeline2app

Installation

Pipeline2App can be installed for Python 3 using pip:

$ python3 -m pip install pipeline2app

This will enable you run basic apps against generic directory trees, however, if you want to build specific apps you will also need to install the appropriate extension package, e.g.

$ python3 -m pip install pipeline2app-xnat

License

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License

Acknowledgements

The authors acknowledge the facilities and scientific and technical assistance of the National Imaging Facility, a National Collaborative Research Infrastructure Strategy (NCRIS) capability.