plate-layout 1.3.0

A tool to create and visualize sample layouts for multiwell plates.

plate_layout

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Table of Contents

• Installation
• License
• Example

Installation

pip install plate-layout

License

plate-layout is distributed under the terms of the MIT license.

TODO

• Add python script and a main function for CLI usage ...

Example

Defining the plate type and quality control setup

The plate dimensions and (optional) quality control layouts are are defined in a toml file; see `plate_config.toml' in the config folder for an example.

import plate_layout as pl
import pandas as pd
import numpy as np
import logging

pl.logger.setLevel(logging.INFO)

Create a plate layout

Create plate design by specifying the path to a config file directly when instantiating the class,

Load study data and randomize order

Batches - distributing samples on plates

Export batch lists to file

You can export batch lists using the to_file method and specify desired file format and which columns to export.

Plot plate layouts