A tool to create and visualize sample layouts for multiwell plates.
Project description
plate_layout
Table of Contents
Installation
pip install plate-layout
License
plate-layout
is distributed under the terms of the MIT license.
TODO
- Add python script and a main function for CLI usage ...
Example
Defining the plate type and quality control setup
The plate dimensions and (optional) quality control layouts are are defined in a toml file; see `plate_config.toml' in the config folder for an example.
import plate_layout as pl
import pandas as pd
import numpy as np
import logging
pl.logger.setLevel(logging.INFO)
Create a plate layout
Create plate design by specifying the path to a config file directly when instantiating the class,
Load study data and randomize order
Batches - distributing samples on plates
Export batch lists to file
You can export batch lists using the to_file
method and specify desired file format and which columns to export.
Plot plate layouts
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