plenoptic 1.0.2

Python library for model-based stimulus synthesis.

plenoptic

plenoptic is a python library for model-based stimulus synthesis. It provides tools to help researchers understand their model by synthesizing novel informative stimuli, which help build intuition for what features the model ignores and what it is sensitive to. These synthetic images can then be used in future perceptual or neural experiments for further investigation.

Getting started

• If you are unfamiliar with stimulus synthesis, see the conceptual introduction for an in-depth introduction.
• If you understand the basics of synthesis and want to get started using plenoptic quickly, see the Quickstart tutorial.

Installation

The best way to install plenoptic is via pip.

$ pip install plenoptic

See the installation page for more details, including how to set up a virtual environment and jupyter.

ffmpeg and videos

Several methods in this package generate videos. There are several backends possible for saving the animations to file, see matplotlib documentation for more details. In order convert them to HTML5 for viewing (and thus, to view in a jupyter notebook), you'll need ffmpeg installed and on your path as well. Depending on your system, this might already be installed, but if not, the easiest way is probably through [conda] (https://anaconda.org/conda-forge/ffmpeg): conda install -c conda-forge ffmpeg.

To change the backend, run matplotlib.rcParams['animation.writer'] = writer before calling any of the animate functions. If you try to set that rcParam with a random string, matplotlib will tell you the available choices.

Contents

Synthesis methods

• Metamers: given a model and a reference image, stochastically generate a new image whose model representation is identical to that of the reference image. This method investigates what image features the model disregards entirely.
• Eigendistortions: given a model and a reference image, compute the image perturbation that produces the smallest and largest changes in the model response space. This method investigates the image features the model considers the least and most important.
• Maximal differentiation (MAD) competition: given two metrics that measure distance between images and a reference image, generate pairs of images that optimally differentiate the models. Specifically, synthesize a pair of images that the first model says are equi-distant from the reference while the second model says they are maximally/minimally distant from the reference. Then synthesize a second pair with the roles of the two models reversed. This method allows for efficient comparison of two metrics, highlighting the aspects in which their sensitivities differ.
• Geodesics: given a model and two images, synthesize a sequence of images that lie on the shortest ("geodesic") path in the model's representation space. This method investigates how a model represents motion and what changes to an image it consider reasonable.

Models, Metrics, and Model Components

• Portilla-Simoncelli texture model, which measures the statistical properties of visual textures, here defined as "repeating visual patterns."
• Steerable pyramid, a multi-scale oriented image decomposition. The basis are oriented (steerable) filters, localized in space and frequency. Among other uses, the steerable pyramid serves as a good representation from which to build a primary visual cortex model. See the pyrtools documentation for more details on image pyramids in general and the steerable pyramid in particular.
• Structural Similarity Index (SSIM), is a perceptual similarity metric, returning a number between -1 (totally different) and 1 (identical) reflecting how similar two images are. This is based on the images' luminance, contrast, and structure, which are computed convolutionally across the images.
• Multiscale Structrual Similarity Index (MS-SSIM), is a perceptual similarity metric similar to SSIM, except it operates at multiple scales (i.e., spatial frequencies).
• Normalized Laplacian distance, is a perceptual distance metric based on transformations associated with the early visual system: local luminance subtraction and local contrast gain control, at six scales.

Getting help

We communicate via several channels on Github:

• Discussions is the place to ask usage questions, discuss issues too broad for a single issue, or show off what you've made with plenoptic.
• If you've come across a bug, open an issue.
• If you have an idea for an extension or enhancement, please post in the ideas section of discussions first. We'll discuss it there and, if we decide to pursue it, open an issue to track progress.
• See the contributing guide for how to get involved.

In all cases, please follow our code of conduct.

Citing us

If you use plenoptic in a published academic article or presentation, please cite us! See the citation guide for more details.

Support

This package is supported by the Simons Foundation Flatiron Institute's Center for Computational Neuroscience.