PhysioZoo OBM documentation
Oximetry digital biomarkers for the analysis of continuous oximetry (SpO2) time series.
Based on the paper Jeremy Levy, Daniel ́Alvarez, Aviv A Rosenberg, Alexandra Alexandrovich, F ́elix Del Campo, and Joachim ABehar. Digital oximetry biomarkers for assessing respiratory function: standards of measurement, physiologicalinterpretation, and clinical use.NPJ digital medicine, 4(1):1–14, 2021
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Description
Five types of biomarkers may be evaluated:
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General statistics: time-based statistics describing the oxygen saturation time series data distribution.
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Complexity: quantify the presence of long-range correlations in non-stationary time series.
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Periodicity: quantify consecutive events creating some periodicity in the oxygen saturation time series.
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Desaturations: time-based measures that are descriptive statistics of the desaturation patterns happening throughout the time series.
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Hypoxic burden: time-based measures quantifying the overall degree of hypoxemia imposed to the heart and other organs during the recording period.
Installation
Available on pip, with the command: pip install pobm
pip project: https://pypi.org/project/pobm/
Requirements
numpy > 1.18.2
scikit-learn > 0.22.2
scipy > 1.4.1
lempel-ziv-complexity==0.2.2
All the requirements are installed when the toolbox is installed, no need for additional commands.
Documentation
Available at https://oximetry-toolbox.readthedocs.io/en/latest/
3 maintainers
Metadata
3 maintainers
Release files for pobm 1.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| pobm-1.2.0.tar.gz | 21.7 MB | Without provenance | Details for pobm-1.2.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| pobm-1.2.0-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details for pobm-1.2.0-py2.py3-none-any.whl |
Total release size: 21.8 MB
Release files / pobm-1.2.0.tar.gz
| Download URL | pobm-1.2.0.tar.gz |
|---|---|
| Size | 21.7 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/4.0.1 CPython/3.10.8
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Release files / pobm-1.2.0-py2.py3-none-any.whl
| Download URL | pobm-1.2.0-py2.py3-none-any.whl |
|---|---|
| Size | 31.9 kB |
| Tags | Python 2 Python 3 |
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No |
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twine/4.0.1 CPython/3.10.8
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Security for pobm 1.2.0
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