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Compute minimal metabolic precursors sets that enable the production of target metabolites.

Project Description

Installation
============

You can install precursor by running::

$ pip install --user precursor


Usage
=====

Typical usage is::

$ precursor.py --autoseeds network targets

For more options you can ask for help as follows::

$ precursor.py --help
usage: precursor.py [-h] [--autoseeds] net inputs

positional arguments:
net metabolic network in SBML format
inputs targets in XML format

optional arguments:
-h, --help show this help message and exit
--autoseeds compute possible seed metabolites


Samples
=======

An archive with sample files is available here:
precursor_data.tar.gz_

.. _precursor_data.tar.gz: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/precursor_data.tar.gz

Release history Release notifications

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1.2.2

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1.2.1

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1.2

This version
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1.1

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1.0dev

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Filename, size & hash SHA256 hash help File type Python version Upload date
precursor-1.1.tar.gz (336.3 kB) Copy SHA256 hash SHA256 Source None Jan 16, 2014

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