pRESTO - The REpertoire Sequencing TOolkit
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
5 maintainers
Metadata
5 maintainers
Release files for presto 0.5.11
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| presto-0.5.11.tar.gz | 99.8 kB | Details |
Release files / presto-0.5.11.tar.gz
| Download URL | presto-0.5.11.tar.gz |
|---|---|
| Size | 99.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
1fd6ef06ec1fe02aec87fecf3ed7bbff39596dab8d55eb0df3c9525921cad80b
|
|
BLAKE2b-256 checksum How to use checksums |
6e551b468434ba1185f44fc9f7b3714be090cda12e95d809a4d4d9f1dee6d616
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.9.1 pkginfo/1.3.2 requests/2.20.0 setuptools/39.2.0 requests-toolbelt/0.8.0 tqdm/4.19.6 CPython/3.6.6
|
