pRESTO - The REpertoire Sequencing TOolkit
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
5 maintainers
Metadata
5 maintainers
Release files for presto 0.7.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| presto-0.7.3.tar.gz | 120.9 kB | Details |
Release files / presto-0.7.3.tar.gz
| Download URL | presto-0.7.3.tar.gz |
|---|---|
| Size | 120.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
7c9359570ff74090b4eccefcd644fb99e81a2b97b0a1b0faf27f3f5c6f38983e
|
|
BLAKE2b-256 checksum How to use checksums |
12a759a319b106065b0221887182d574ea16390d7e44b0a9e69a2fbca0661e28
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
