A tool to predict programmed ribosomal frameshifts
Project description
prfect
python3 prfect.py test/covid19.gbk
and the output are genes that are predicted to utilize programmed ribosomal frameshifing (any already PRF genes that use the join keyword, are split into their two parts and also predicted
ribo frameshift detected in develop/prfect/test/covid19.gbk
CDS join(266..13468,13468..21555)
/ribosomal_slippage=-1
/slippery_sequence=tttaaacggg
/motif=is_threethree
/label=1
/product="ORF1ab polyprotein","ORF1ab polyprotein"
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
prfect-0.29.tar.gz
(552.3 kB
view hashes)
Built Distribution
prfect-0.29-py3-none-any.whl
(448.6 kB
view hashes)